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SRX5843262: Morphoseq long fragment end library of Propionibacterium propionicum, Oral Taxon 739, Strain F0230
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.2M spots, 346.4M bases, 114.5Mb downloads

Design: Morphoseq long fragment end library
Submitted by: University of Technology Sydney
Study: Development & evaluation of Morphoseq synthetic long read sequencing technology
show Abstracthide Abstract
This project aims to evaluate a new method for generating synthetic long reads from short read (Illumina, BGI, etc) sequencing data. Long templates (8-10kbp) are randomly mutagenized using primer extension in the presence of the nucleotide analogue dPTP, which can base pair with A or G. The dPTP is then removed and a random set of mutations are fixed via a further primer extension in the presence of only natural nucleotides. Finally, a targeted number of the mutagenized templates are replicated with PCR and used to make a short read sequencing library. Short reads from the same template can be identified via the presence of shared mutations in overlapping regions.
Sample: MIGS Cultured Bacterial/Archaeal sample from Propionibacterium propionicum F0230a
SAMN02415616 • SRS4768297 • All experiments • All runs
Library:
Name: HM-209D
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.2M spots, 346.4M bases, 114.5Mb
Run# of Spots# of BasesSizePublished
SRR90671661,168,885346.4M114.5Mb2020-05-20

ID:
7852669

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